PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016456682.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 153aa    MW: 17317.7 Da    PI: 10.068
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016456682.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF61.11.3e-191661247
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                    +ien+ nrqvtfskRrng++KKA+EL  + +ae+++i+f +  k y
  XP_016456682.1 16 KIENQNNRQVTFSKRRNGVFKKANELAAMIGAEICIIVFPPGSKPY 61
                    79************************************98776655 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006621.432767IPR002100Transcription factor, MADS-box
SMARTSM004321.6E-22766IPR002100Transcription factor, MADS-box
PRINTSPR004048.3E-16929IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.14E-231077IPR002100Transcription factor, MADS-box
PfamPF003193.1E-221663IPR002100Transcription factor, MADS-box
PRINTSPR004048.3E-162944IPR002100Transcription factor, MADS-box
PRINTSPR004048.3E-164465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MSTRLIKGSK SVRLAKIENQ NNRQVTFSKR RNGVFKKANE LAAMIGAEIC IIVFPPGSKP  60
YSFGHPNVNE TIDKYVGEET PPSPSSPGID GNKLKNTNKN LERQQEWFRG PIDKMNYTEA  120
SMLKEGLEYL LLKVKNYGTE RGYGYENGKW KAE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009599183.11e-110PREDICTED: agamous-like MADS-box protein AGL61
RefseqXP_016456682.11e-110PREDICTED: agamous-like MADS-box protein AGL61
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA2414522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.19e-26AGAMOUS-like 61